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1

Kinetics and Motional Dynamics of Spin-Labeled Yeast Iso-1-cytochrome c : 1. Stopped-Flow Electron Paramagnetic Resonance as a Probe for Protein Folding/Unfolding of the C-Terminal Helix Spin-Labeled at Cysteine 102 †

Qu, Kunbin, Vaughn, Jeffrey L., Sienkiewicz, Andrzej, Scholes, Charles P., Fetrow, Jacquelyn S.

Journal:

Year:

1997

Language:

english

File:

PDF, 601 KB

english, 1997

2

[ACM Press the 37th SIGCSE technical symposium - Houston, Texas, USA (2006.03.03-2006.03.05)] Proceedings of the 37th SIGCSE technical symposium on Computer science education - SIGCSE '06 - Bioinformatics and computing curriculum

Fetrow, Jacquelyn S., John, David J.

Year:

2006

Language:

english

File:

PDF, 1.59 MB

english, 2006

3

New computational approaches to understanding molecular protein function

Fetrow, Jacquelyn S., Babbitt, Patricia C.

Journal:

PLoS Computational Biology

Year:

2018

Language:

english

File:

PDF, 3.49 MB

english, 2018

4

Prediction and evaluation of side-chain conformations for protein backbone structures

Shenkin, Peter S., Farid, Hany, Fetrow, Jacquelyn S.

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1996

Language:

english

File:

PDF, 2.70 MB

english, 1996

5

Patterns, structures, and amino acid frequencies in structural building blocks, a protein secondary structure classification scheme

Jacquelyn S. Fetrow, Michael J. Palumbo, George Berg

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1997

Language:

english

File:

PDF, 669 KB

english, 1997

6

Microarray analysis reveals age-related differences in gene expression during the development of osteoarthritis in mice

Richard F. Loeser, Amy L. Olex, Margaret A. McNulty, Cathy S. Carlson, Michael F. Callahan, Cristin M. Ferguson, Jeff Chou, Xiaoyan Leng, Jacquelyn S. Fetrow

Journal:

Arthritis & Rheumatism

Year:

2012

Language:

english

File:

PDF, 339 KB

english, 2012

7

Chemical and Structural Diversity in Cyclooxygenase Protein Active Sites

Ryan G. Huff, Ersin Bayram, Huan Tan, Stacy T. Knutson, Michael H. Knaggs, Allen B. Richon, Peter Santago II, Jacquelyn S. Fetrow

Journal:

Chemistry & Biodiversity

Year:

2005

Language:

english

File:

PDF, 1.94 MB

english, 2005

8

Algebraic dependency models of protein signal transduction networks from time-series data

Edward E. Allen, Jacquelyn S. Fetrow, Larry W. Daniel, Stan J. Thomas, David J. John

Journal:

Journal of Theoretical Biology

Year:

2006

Language:

english

File:

PDF, 311 KB

english, 2006

9

The structure and function of omega loop A replacements in cytochrome c

Michael E. P. Murphy, Gary D. Brayer, Jacquelyn S. Fetrow, Randall E. Burton

Journal:

Protein Science

Year:

1993

Language:

english

File:

PDF, 1.92 MB

english, 1993

10

A proposed structural model of domain 1 of fasciclin III neural cell adhesion protein based on an inverse folding algorithm

Laurie A. Castonguay, Peter M. Snow, Jacquelyn S. Fetrow, Stephen H. Bryant

Journal:

Protein Science

Year:

1995

Language:

english

File:

PDF, 1.21 MB

english, 1995

11

Mutagenesis of histidine 26 demonstrates the importance of loop-loop and loop-protein interactions for the function of iso-1-cytochrome c

Jacquelyn S. Fetrow, Ulrike Dreher, Debra J. Wiland, Diane L. Schaak, Terry L. Boose

Journal:

Protein Science

Year:

1998

Language:

english

File:

PDF, 3.11 MB

english, 1998

12

Prediction of deleterious functional effects of amino acid mutations using a library of structure-based function descriptors

Sanna Herrgard, Stephen A. Cammer, Brian T. Hoffman, Stacy Knutson, Marijo Gallina, Jeffrey A. Speir, Jacquelyn S. Fetrow, Susan M. Baxter

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2003

Language:

english

File:

PDF, 285 KB

english, 2003

13

Mutations in α-helical solvent-exposed sites of eglin c have long-range effects: Evidence from molecular dynamics simulations

Jacquelyn S. Fetrow, Stacy T. Knutson, Marshall Hall Edgell

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2006

Language:

english

File:

PDF, 1.74 MB

english, 2006

14

Rose is a rose is a rose. Especially if you're a George

Trevor P. Creamer, Jacquelyn S. Fetrow

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2006

Language:

english

File:

PDF, 80 KB

english, 2006

15

Using molecular dynamics to map interaction networks in an aminoacyl-tRNA synthetase

Michael E. Budiman, Michael H. Knaggs, Jacquelyn S. Fetrow, Rebecca W. Alexander

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2007

Language:

english

File:

PDF, 1023 KB

english, 2007

16

Analysis of the peroxiredoxin family: Using active-site structure and sequence information for global classification and residue analysis

Kimberly J. Nelson, Stacy T. Knutson, Laura Soito, Chananat Klomsiri, Leslie B. Poole, Jacquelyn S. Fetrow

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2011

Language:

english

File:

PDF, 932 KB

english, 2011

17

Deletions and replacements of omega loops in yeast iso-1-cytochrome c

Jacquelyn S. Fetrow, Thomas S. Cardillo, Fred Sherman

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1989

Language:

english

File:

PDF, 964 KB

english, 1989

18

Oligomerization of profilins from birch, man and yeast. Profilin, a ligand for itself?

Irene Mittermann, Jacquelyn S. Fetrow, Diana L. Schaak, Steven C. Almo, Dietrich Kraft, Erwin Heberle-Bors, R. Valenta

Journal:

Plant Reproduction

Year:

1998

Language:

english

File:

PDF, 284 KB

english, 1998

19

10.1038/73723

Skolnick, Jeffrey, Fetrow, Jacquelyn S., Kolinski, Andrzej

Journal:

Nature Biotechnology

Year:

2000

Language:

english

File:

PDF, 142 KB

english, 2000

20

Protein Folding: New Twists

Fetrow, Jacquelyn S., Zehfus, Micheal H., Rose, George D.

Journal:

Year:

1988

File:

PDF, 576 KB

1988

21

New Programs for Protein Tertiary Structure Prediction

Fetrow, Jacquelyn S., Bryant, Stephen H.

Journal:

Year:

1993

File:

PDF, 962 KB

1993

22

Functional site profiling and electrostatic analysis of cysteines modifiable to cysteine sulfenic acid

Freddie R. Salsbury Jr, Stacy T. Knutson, Leslie B. Poole, Jacquelyn S. Fetrow

Journal:

Protein Science

Year:

2008

Language:

english

File:

PDF, 600 KB

english, 2008

23

Genomic-scale comparison of sequence- and structure-based methods of function prediction: Does structure provide additional insight?

Jacquelyn S. Fetrow, Naomi Siew, Jeannine A. Di Gennaro, Maria Martinez-Yamout, H. Jane Dyson, Jeffrey Skolnick

Journal:

Protein Science

Year:

2001

Language:

english

File:

PDF, 348 KB

english, 2001

24

From fold predictions to function predictions: Automation of functional site conservation analysis for functional genome predictions

Baohong Zhang, Leszek Rychlewski, Krzysztof Pawlowski, Jacquelyn S. Fetrow, Jeffrey Skolnick, Adam Godzik

Journal:

Protein Science

Year:

1999

Language:

english

File:

PDF, 1.36 MB

english, 1999

25

From genes to protein structure and function: novel applications of computational approaches in the genomic era

Jeffrey Skolnick, Jacquelyn S. Fetrow

Journal:

Trends in Biotechnology

Year:

2000

Language:

english

File:

PDF, 124 KB

english, 2000

26

Functional analysis of the Escherichia coli genome for members of the α/β hydrolase family

Li Zhang, Adam Godzik, Jeffrey Skolnick, Jacquelyn S. Fetrow

Journal:

Folding and Design

Year:

1998

Language:

english

File:

PDF, 196 KB

english, 1998

27

Function first: a powerful approach to post-genomic drug discovery

Stephen F. Betz, Susan M. Baxter, Jacquelyn S. Fetrow

Journal:

Drug Discovery Today

Year:

2002

Language:

english

File:

PDF, 165 KB

english, 2002

28

Dynamics of dendritic cell maturation are identified through a novel filtering strategy applied to biological time-course microarray replicates

Amy L Olex, Elizabeth M Hiltbold, Xiaoyan Leng, Jacquelyn S Fetrow

Journal:

Year:

2010

Language:

english

File:

PDF, 1.60 MB

english, 2010

29

Electrostatics of cysteine residues in proteins: Parameterization and validation of a simple model

Freddie R. Salsbury Jr., Leslie B. Poole, Jacquelyn S. Fetrow

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2012

Language:

english

File:

PDF, 214 KB

english, 2012

30

Method for prediction of protein function from sequence using the sequence-to-structure-to-function paradigm with application to Glutaredoxins/Thioredoxins and T1Ribonucleases

Jacquelyn S Fetrow, Jeffrey Skolnick

Journal:

Journal of Molecular Biology

Year:

1998

Language:

english

File:

PDF, 827 KB

english, 1998

31

Functional analysis of the Escherichia coli genome using the sequence-to-structure-to-function paradigm: identification of proteins exhibiting the Glutaredoxin/Thioredoxin disulfide oxidoreductase activity

Jacquelyn S Fetrow, Adam Godzik, Jeffrey Skolnick

Journal:

Journal of Molecular Biology

Year:

1998

Language:

english

File:

PDF, 262 KB

english, 1998

32

Roles for glycosylation of cell surface receptors involved in cellular immune recognition

Pauline M Rudd, Mark R Wormald, Robyn L Stanfield, Mingdong Huang, Niklas Mattsson, Jeffrey A Speir, Jeannine A DiGennaro, Jacquelyn S Fetrow, Raymond A Dwek, Ian A Wilson

Journal:

Journal of Molecular Biology

Year:

1999

Language:

english

File:

PDF, 1.16 MB

english, 1999

33

Enhanced Functional Annotation of Protein Sequences via the Use of Structural Descriptors

Jeannine A Di Gennaro, Naomi Siew, Brian T Hoffman, Li Zhang, Jeffrey Skolnick, Lorna I Neilson, Jacquelyn S Fetrow

Journal:

Journal of Structural Biology

Year:

2001

Language:

english

File:

PDF, 382 KB

english, 2001

34

A method of directed random mutagenesis of the yeast chromosome shows that the iso-1-cytochrome c heme ligand His18 is essential

Gerard Fumo, Jennifer S. Spitzer, Jacquelyn S. Fetrow

Journal:

Year:

1995

Language:

english

File:

PDF, 743 KB

english, 1995

35

Structure-based Active Site Profiles for Genome Analysis and Functional Family Subclassification

Stephen A. Cammer, Brian T. Hoffman, Jeffrey A. Speir, Mary A. Canady, Melanie R. Nelson, Stacy Knutson, Marijo Gallina, Susan M. Baxter, Jacquelyn S. Fetrow

Journal:

Journal of Molecular Biology

Year:

2003

Language:

english

File:

PDF, 773 KB

english, 2003

36

Analysis of the structure and stability of omega loop A replacements in yeast iso-1-cytochrome c

Jacquelyn S. Fetrow, Scott R. Horner, Wolf Oehrl, Diane L. Schaak, Terry L. Boose, Randall E. Burton

Journal:

Protein Science

Year:

1997

Language:

english

File:

PDF, 3.98 MB

english, 1997

37

Insights into Correlated Motions and Long-Range Interactions in CheY Derived from Molecular Dynamics Simulations

Knaggs, Michael H., Salsbury, Freddie R., Edgell, Marshall Hall, Fetrow, Jacquelyn S.

Journal:

Biophysical Journal

Year:

2007

Language:

english

File:

PDF, 2.51 MB

english, 2007

38

Metabolic pathways are affected differently inSaccharomyces cerevisiaethiol peroxidase mutants during redox stress with hydrogen peroxide

Amy L Olex, Brian M Westwood, Leslie B Poole, Jacquelyn S Fetrow

Journal:

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

39

Metabolic pathways are affected differently inSaccharomyces cerevisiaethiol peroxidase mutants during redox stress with hydrogen peroxide

Amy L Olex, Brian M Westwood, Leslie B Poole, Jacquelyn S Fetrow

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

40

Integration of gene expression data with network-based analysis to identify signaling and metabolic pathways regulated during the development of osteoarthritis

Olex, Amy L., Turkett, William H., Fetrow, Jacquelyn S., Loeser, Richard F.

Journal:

Year:

2014

Language:

english

File:

PDF, 1.68 MB

english, 2014

41

Comparison of Peroxiredoxin Sensitivity towards Inactivation by Peroxide Substrates

Nelson, Kimberly J., Knutson, Stacy T, Parsonage, Derek, Fetrow, Jacquelyn S., Andrew Karplus, P., Poole, Leslie B.

Journal:

Free Radical Biology and Medicine

Year:

2013

Language:

english

File:

PDF, 72 KB

english, 2013

42

Hydrogen Exchange Behavior of [ U - 15 N]-Labeled Oxidized and Reduced Iso-1-cytochrome c †

Baxter, Susan M., Fetrow, Jacquelyn S.

Journal:

Year:

1999

Language:

english

File:

PDF, 124 KB

english, 1999

43

EPR-Detected Folding Kinetics of Externally Located Cysteine-Directed Spin-Labeled Mutants of Iso-1-cytochrome c †

DeWeerd, Kim, Grigoryants, Vladimir, Sun, Yuhua, Fetrow, Jacquelyn S., Scholes, Charles P.

Journal:

Year:

2001

Language:

english

File:

PDF, 119 KB

english, 2001

44

Fluorescent and Affinity-Based Tools To Detect Cysteine Sulfenic Acid Formation in Proteins

Poole, Leslie B., Klomsiri, Chananat, Knaggs, Sarah A., Furdui, Cristina M., Nelson, Kimberly J., Thomas, Michael J., Fetrow, Jacquelyn S., Daniel, Larry W., King, S. Bruce

Journal:

Bioconjugate Chemistry

Year:

2007

Language:

english

File:

PDF, 510 KB

english, 2007

45

Structural and Electrostatic Asymmetry at the Active Site in Typical and Atypical Peroxiredoxin Dimers

Salsbury, Freddie R., Yuan, Ye, Knaggs, Michael H., Poole, Leslie B., Fetrow, Jacquelyn S.

Journal:

Journal of Physical Chemistry B

Year:

2012

Language:

english

File:

PDF, 4.99 MB

english, 2012

46

Assignment of 15 N Chemical Shifts and 15 N Relaxation Measurements for Oxidized and Reduced Iso-1-cytochrome c †

Fetrow, Jacquelyn S., Baxter, Susan M.

Journal:

Year:

1999

Language:

english

File:

PDF, 169 KB

english, 1999

47

Structure, Function, and Temperature Sensitivity of Directed, Random Mutants at Proline 76 and Glycine 77 in Ω-Loop D of Yeast Iso-1-cytochrome c †

Fetrow, Jacquelyn S., Spitzer, Jennifer S., Gilden, Brad M., Mellender, Scott J., Begley, Thomas J., Haas, Brian J., Boose, Terry L.

Journal:

Year:

1998

Language:

english

File:

PDF, 199 KB

english, 1998

48

15 N Isotopic Labeling and Amide Hydrogen Exchange Rates of Oxidized Iso-1-cytochrome c

Baxter, Susan M., Boose, Terry L., Fetrow, Jacquelyn S.

Journal:

Journal of the American Chemical Society

Year:

1997

Language:

english

File:

PDF, 86 KB

english, 1997

49

Conformational and Oligomeric Effects on the Cysteine pK a of Tryparedoxin Peroxidase

Yuan, Ye, Knaggs, Michael H., Poole, Leslie B., Fetrow, Jacquelyn S., Salsbury, Freddie R.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2010

Language:

english

File:

PDF, 1.93 MB

english, 2010

50

[IEEE 2007 IEEE 7th International Symposium on BioInformatics and BioEngineering - Boston, MA, USA (2007.10.14-2007.10.17)] 2007 IEEE 7th International Symposium on BioInformatics and BioEngineering - Metropolis-Hastings Algorithm and Continuous Regression for finding Next-State Models of Protein Modification using Information Scores

John, David J., Fetrow, Jacquelyn S., Norris, James L.

Year:

2007

Language:

english

File:

PDF, 184 KB

english, 2007

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